Publications

Preprints or Ito’s works before 2019

Bold fonts : Lab. members

2024

Naruo Ohga and Sosuke Ito ”Inferring nonequilibrium thermodynamics from tilted equilibrium using information-geometric Legendre transform” Physical Review Research 6, 013315 (2024).

Artemy Kolchinsky, Naruo Ohga and Sosuke Ito ”Thermodynamic bound on spectral perturbations, with applications to oscillations and relaxation dynamics” Physical Review Research 6, 013082 (2024).

Yuma Fujimoto, and Sosuke Ito ”Game-theoretical approach to minimum entropy productions in information thermodynamics” Physical Review Research 6, 013023 (2024). 

2023

Ken Hiura ”Microscopic derivation of nonlinear fluctuating hydrodynamics for crystalline solid” Physical Review E 108, 054101 (2023).

Naruo Ohga, Sosuke Ito and Artemy Kolchinsky ”Thermodynamic bound on the asymmetry of cross-correlations” Physical Review Letters, 131, 077101 (2023). Editors’ suggestion, Featured in Physics

Masahiro Hoshino, Ryuna Nagayama, Kohei Yoshimura, Jumpei F. Yamagishi, and Sosuke Ito ”Geometric speed limit for acceleration by natural selection in evolutionary processes” Physical Review Research 5, 023127 (2023).

Takuya Kamijima, Sosuke Ito, Andreas Dechant, and Takahiro Sagawa “Thermodynamic uncertainty relations for steady-state thermodynamics” Phys. Rev. E 107, L052101 (2023).

Sosuke Ito ”Geometric thermodynamics for the Fokker–Planck equation: stochastic thermodynamic links between information geometry and optimal transport” Information Geometry 7, 441–483 (2024).
Invited paper, Special Issue: Half a Century of Information Geometry

Kohei Yoshimura, Artemy Kolchinsky, Andreas Dechant, and Sosuke Ito ”Housekeeping and excess entropy production for general nonlinear dynamics” Physical Review Research 5, 013017 (2023).

2022

Naruo Ohga and Sosuke ItoInformation-geometric structure for chemical thermodynamics: An explicit construction of dual affine coordinates” Physical Review E 106, 044131 (2022).

Forrest C. Sheldon, Artemy Kolchinsky, and Francesco Caravelli “Computational capacity of LRC, memristive, and hybrid reservoirs”, Physical Review E  106, 045310 (2022).

Shin-ichi Sasa, Ken Hiura, Naoko Nakagawa and Akira Yoshida “Quasi-static Decomposition and the Gibbs Factorial in Small Thermodynamic Systems” Journal of Statistical Physics 189, 31 (2022).

Andreas Dechant, Shin-ichi Sasa and Sosuke Ito, “Geometric decomposition of entropy production into excess, housekeeping and coupling parts” Physical Review E 106, 024125 (2022).

Takeshi Sugawara and Kunihiko Kaneko, ”Chemophoresis engine: A general mechanism of ATPase-driven cargo transport” PLOS Computational Biology, 18, e1010324 (2022).

Satoshi Yoshida, Yasushi Okada, Eiro Muneyuki, Sosuke Ito ”Thermodynamic role of main reaction pathway and multi-body information flow in membrane transport” Physical Review Research 4, 023229 (2022).

Artemy Kolchinsky, “A Novel Approach to the Partial Information Decomposition” Entropy 24, 403 (2022).

Andreas Dechant, Shin-ichi Sasa and Sosuke Ito, “Geometric decomposition of entropy production in out-of-equilibrium systems” Physical Review Research 4, L012034 (2022).

Sosuke Ito, “Information geometry, trade-off relations, and generalized Glansdorff-Prigogine criterion for stability” Journal of Physics A: Mathematical and Theoretical 55 054001 (2022).
Invited paper, Special issue: Nonequilibrium Thermodynamic Trade-offs on Uncertainty

2021

Muka Nakazato, and Sosuke Ito, “Geometrical aspects of entropy production in stochastic thermodynamics based on Wasserstein distance” Physical Review Research 3, 043093 (2021). 

Kohei Yoshimura, and Sosuke Ito, “Thermodynamic Uncertainty Relation and Thermodynamic Speed Limit in Deterministic Chemical Reaction Networks” Physical Review Letters 127, 160601 (2021). Editors’ suggestion

Kohei Yoshimura, and Sosuke Ito, “Information geometric inequalities of chemical thermodynamics” Physical Review Research 3, 013175 (2021). 

Matthijs Meijers,  Sosuke Ito, and Pieter Rein ten Wolde, “Behavior of information flow near criticality” Physical Review E 103, L010102 (2021). 

2020

Sosuke Ito, Masafumi Oizumi, and Shun-ichi Amari, “Unified framework for the entropy production and the stochastic interaction based on information geometry” Physical Review Research 2, 033048 (2020). 

Sosuke Ito and Andreas Dechant, “Stochastic Time Evolution, Information Geometry, and the Cramér-Rao Bound” Physical Review X 10, 021056 (2020).

Shun Otsubo, Sosuke Ito, Andreas Dechant, and Takahiro Sagawa “Estimating entropy production by machine learning of short-time fluctuating currents” Physical Review E 101, 062106 (2020).

Keita Ashida, Hisashi Shidara, Kohji Hotta, Kotaro Oka, “Optical Dissection of Synaptic Plasticity for Early Adaptation in Caenorhabditis elegans in Caenorhabditis elegans” Neuroscience 434, 212 (2020).

2019

H Mori, K. Ashida, H Shidara, T Nikai, K Hotta, K Oka “Serotonin modulates behavior-related neural activity of RID interneuron in Caenorhabditis elegans” PLoS One, 14, e0226044 (2019).

K. Shimizu, K. Ashida, K. Hotta, K. Oka. “Food deprivation changes chemotaxis behavior in Caenorhabditis elegans” Biophysics and Physicobiology 16, 167 (2019).